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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
Assay category
161
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
49
November, 2017
33
August, 2017
27
May, 2020
21
December, 2017
19
November, 2018
7
August, 2021
5
October, 2019
Available data
139
bigWig
137
bam
137
bed narrowPeak
102
fastq
90
bigBed narrowPeak
58
tagAlign
18
bed broadPeak
18
bigBed broadPeak
3
bed bed3+
1
tar
Organism
161
Homo sapiens
Biosample type
72
cell line
72
tissue
14
in vitro differentiated cells
3
primary cell
Organ
190
brain
161
liver
160
pancreas
108
heart
101
epithelium
88
connective tissue
76
vasculature
74
blood vessel
49
limb
37
adipose tissue
33
kidney
33
musculature of body
24
nerve
21
artery
15
vein
12
embryo
11
blood
11
bodily fluid
6
spleen
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
161
AMP
Genome assembly (visualization)
138
hg19
121
GRCh38
Lab
157
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
3
missing controlled_by
Audit category:
18
inconsistent control read length
3
inconsistent control run_type
month_released!
May, 2022
BIOSAMPLE
ASSAY
161 results
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Clear Filters
ChIP-seq
cell line
HepG2
72
tissue
liver
66
right lobe of liver
6
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
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