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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
Assay category
216
DNA binding
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
32
September, 2018
26
August, 2017
19
June, 2019
16
October, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
230
bigWig
216
bed narrowPeak
203
bam
98
tagAlign
73
fastq
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
216
Homo sapiens
Biosample type
519
tissue
216
primary cell
78
in vitro differentiated cells
35
cell line
2
stem cell
Organ
61
epithelium
46
pancreas
12
vasculature
11
blood vessel
10
kidney
10
vein
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
132
AMP
84
T1D
Genome assembly (visualization)
216
hg19
186
GRCh38
Lab
114
Kyle Gaulton, UCSD
102
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2022
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
skeletal muscle myoblast
12
pancreatic endocrine cell
11
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