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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
119
ChIP-seq
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
119
DNA binding
4
3D chromatin structure
1
DNA accessibility
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
49
August, 2017
38
December, 2017
31
February, 2018
22
February, 2021
21
August, 2021
6
March, 2020
4
October, 2019
Available data
247
bam
242
bigWig
127
tsv
118
fastq
110
bed narrowPeak
21
bed bed3+
17
tagAlign
15
bigBed narrowPeak
6
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
255
Homo sapiens
Biosample type
1632
tissue
544
primary cell
517
cell line
255
in vitro differentiated cells
3
stem cell
Organ
56
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
255
AMP
Genome assembly (visualization)
255
hg19
248
GRCh38
4
hg18
Lab
253
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2023
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
255 results
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total RNA-seq
ChIP-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
12
pancreatic endoderm
4
13
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