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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
569
ChIP-seq
189
total RNA-seq
ATAC-seq
8
DNase-seq
6
Hi-C
5
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
FAIRE-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
569
DNA binding
193
Transcription
9
DNA accessibility
7
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
118
histone modification
117
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
35
August, 2021
27
October, 2019
20
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
4
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
698
bam
616
bigWig
464
fastq
431
bed narrowPeak
370
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
15
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
csv
1
hdf5
1
vcf
Organism
790
Homo sapiens
Biosample type
400
cell line
340
tissue
35
primary cell
15
in vitro differentiated cells
Organ
794
pancreas
768
liver
658
connective tissue
484
adipose tissue
421
epithelium
346
heart
282
brain
276
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
790
AMP
Genome assembly (visualization)
619
hg19
540
GRCh38
Lab
739
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2023
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
790 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
FAIRE-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
1
2
2
1
tissue
liver
145
167
2
1
3
1
1
1
1
right lobe of liver
10
3
2
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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