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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
201
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
57
broad histone mark
56
narrow histone mark
49
transcription factor
38
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
46
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
294
bam
257
bigWig
140
fastq
135
tsv
134
bed narrowPeak
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
397
Homo sapiens
Biosample type
2762
tissue
1088
primary cell
662
cell line
390
in vitro differentiated cells
9
stem cell
Organ
98
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
397
AMP
2
community
Genome assembly (visualization)
300
hg19
268
GRCh38
Lab
343
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
116
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
month_released!
May, 2023
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
399 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
+ See 31 more…
stem cell
hESC
3
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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