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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
61
ChIP-seq
6
ATAC-seq
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
400
Transcription
61
DNA binding
8
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
39
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
421
bigWig
401
tsv
40
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
471
Homo sapiens
Biosample type
469
tissue
2
primary cell
1
in vitro differentiated cells
Organ
822
pancreas
726
liver
644
connective tissue
472
adipose tissue
428
epithelium
345
heart
325
kidney
208
vasculature
203
blood vessel
169
brain
159
bone element
135
artery
106
limb
82
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
472
AMP
Genome assembly (visualization)
423
hg19
420
GRCh38
Lab
472
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
May, 2023
assay_title!
WGBS
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
381
1
3
1
subcutaneous abdominal adipose tissue
25
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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