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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
9
DNase-seq
7
WGBS
7
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
169
DNA binding
10
DNA accessibility
8
Transcription
7
DNA methylation
Target of assay
93
transcription factor
39
control
38
RNA binding protein
37
histone
37
histone modification
23
broad histone mark
16
recombinant protein
14
narrow histone mark
13
chromatin remodeller
3
other context
3
other post-translational modification
Date released
712
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
193
bam
178
fastq
153
bigWig
139
bed narrowPeak
139
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
tsv
1
csv
Organism
194
Homo sapiens
Biosample type
107
tissue
84
cell line
3
primary cell
Organ
60
pancreas
58
liver
33
blood
33
bodily fluid
24
adipose tissue
24
connective tissue
16
spleen
2
brain
2
epithelium
Project
194
AMP
Genome assembly (visualization)
152
GRCh38
144
hg19
Lab
194
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2023
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
tissue
body of pancreas
33
2
2
endocrine pancreas
16
spleen
13
1
2
omental fat pad
11
1
subcutaneous adipose tissue
12
+ See 4 more…
cell line
HepG2
45
1
5
GM12878
33
primary cell
pancreatic acinar cell
2
pancreatic cell
1
See all biosamples
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