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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
121
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
92
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
16
August, 2021
12
December, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
94
bam
74
fastq
43
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
164
Homo sapiens
Biosample type
93
tissue
71
cell line
Organ
288
pancreas
epithelium
211
kidney
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
hg19
507
GRCh38
Lab
128
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
month_released!
May, 2023
assembly!
hg19
organ_slims!
epithelium
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
56
9
1
2
1
1
1
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