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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
168
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
165
histone
165
histone modification
105
narrow histone mark
60
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
76
October, 2019
62
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
215
bam
214
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
12
tsv
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
200
tissue
14
primary cell
Organ
611
pancreas
562
connective tissue
528
liver
422
adipose tissue
292
epithelium
223
heart
214
brain
148
vasculature
144
blood vessel
130
kidney
90
limb
85
artery
58
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
28
embryo
18
ureter
16
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
May, 2023
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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