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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
49
total RNA-seq
8
single cell RNA-seq
6
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
70
DNA accessibility
61
Transcription
1
3D chromatin structure
Date released
128
August, 2021
May, 2023
4
March, 2023
Available data
64
bed narrowPeak
64
xls
57
txt
1
hic
Organism
128
Homo sapiens
Biosample type
128
tissue
2
cell line
2
stem cell
Organ
128
kidney
Project
128
AMP
4
community
Genome assembly (visualization)
64
GRCh38
1
hg19
Lab
3911
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
128
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2023
BIOSAMPLE
ASSAY
132 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
49
8
6
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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