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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
19
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
5
control
Date released
13
August, 2017
10
July, 2019
10
June, 2019
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
62
bigWig
54
bed narrowPeak
50
bam
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
43
Homo sapiens
Biosample type
30
tissue
13
primary cell
Organ
923
pancreas
728
liver
673
connective tissue
497
epithelium
487
adipose tissue
342
heart
257
kidney
211
brain
169
vasculature
167
blood vessel
159
bone element
132
artery
79
limb
69
blood
69
bodily fluid
57
eye
43
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
21
hg19
15
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
May, 2023
May, 2019
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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