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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
64
total RNA-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
82
DNA accessibility
DNA binding
1
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
258
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
2
October, 2018
1
August, 2022
1
December, 2018
Available data
113
tsv
76
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
1
hic
Organism
257
Homo sapiens
Biosample type
227
tissue
21
in vitro differentiated cells
10
cell line
Organ
128
kidney
92
heart
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
epithelium
2
pancreas
1
adipose tissue
Project
258
AMP
Genome assembly (visualization)
89
GRCh38
30
hg19
Lab
128
Katalin Susztak, Upenn
126
AMP-T2D consortium
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
month_released!
May, 2023
assay_slims!
DNA binding
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
258 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
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