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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
23
ATAC-seq
6
DNase-seq
Assay category
237
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
97
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
63
December, 2017
52
November, 2018
50
August, 2017
50
May, 2020
22
August, 2021
20
May, 2022
6
October, 2019
2
June, 2019
1
February, 2021
Available data
204
bam
192
bed narrowPeak
190
bigWig
141
fastq
109
bigBed narrowPeak
74
tagAlign
11
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bed3
Organism
266
Homo sapiens
Biosample type
180
tissue
64
cell line
15
in vitro differentiated cells
7
primary cell
Organ
391
pancreas
266
liver
246
epithelium
215
kidney
211
heart
187
connective tissue
164
brain
154
vasculature
152
blood vessel
110
limb
83
artery
81
adipose tissue
74
musculature of body
69
blood
69
bodily fluid
38
nerve
37
eye
22
embryo
22
spleen
20
vein
18
ureter
12
bone element
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
266
AMP
Genome assembly (visualization)
191
hg19
151
GRCh38
Lab
228
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
liver
145
20
2
right lobe of liver
10
1
2
cell line
HepG2
63
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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