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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
Assay category
151
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
109
transcription factor
30
RNA binding protein
23
recombinant protein
20
control
20
histone
20
histone modification
15
chromatin remodeller
10
broad histone mark
10
narrow histone mark
Date released
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
151
bam
143
bed narrowPeak
143
bigWig
105
fastq
104
bigBed narrowPeak
8
tagAlign
Organism
151
Homo sapiens
Biosample type
653
tissue
233
primary cell
151
cell line
146
in vitro differentiated cells
3
stem cell
Organ
60
blood
60
bodily fluid
45
liver
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
149
AMP
2
T1D
Genome assembly (visualization)
129
GRCh38
127
hg19
Lab
151
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
cell line
GM12878
60
HepG2
45
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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