Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
137
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
86
transcription factor
30
histone modification
29
histone
23
RNA binding protein
21
control
17
broad histone mark
16
recombinant protein
12
narrow histone mark
8
chromatin remodeller
Date released
November, 2017
63
December, 2017
53
November, 2018
28
August, 2017
5
January, 2019
1
December, 2018
Available data
367
bam
354
bigWig
192
bed narrowPeak
174
tsv
150
fastq
109
bigBed narrowPeak
74
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
150
Homo sapiens
Biosample type
83
tissue
52
cell line
15
in vitro differentiated cells
Organ
471
pancreas
251
epithelium
150
liver
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
12
brain
2
musculature of body
Project
150
AMP
Genome assembly (visualization)
126
GRCh38
124
hg19
Lab
150
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
assay_title!
DNAme array
BIOSAMPLE
ASSAY
150 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
tissue
liver
67
2
1
1
right lobe of liver
10
1
1
cell line
HepG2
45
5
1
1
in vitro differentiated cells
hepatocyte
15
Download