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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
18
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
37
DNA accessibility
25
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
20
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
166
bam
157
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
27
tsv
12
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
197
Homo sapiens
Biosample type
184
tissue
13
primary cell
Organ
946
pancreas
684
connective tissue
518
epithelium
491
adipose tissue
476
liver
393
heart
354
kidney
230
vasculature
227
blood vessel
195
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
197
AMP
Genome assembly (visualization)
155
GRCh38
151
hg19
Lab
197
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2017
assay_title!
DNAme array
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 3 more…
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