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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
15
ChIP-seq
Assay category
30
DNA accessibility
15
DNA binding
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
November, 2017
24
June, 2019
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1162
bam
1115
bigWig
652
fastq
578
bed narrowPeak
524
tsv
226
bigBed narrowPeak
153
zippedFastqFolder
148
tagAlign
68
bed bed3+
45
bed broadPeak
45
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
45
Homo sapiens
Biosample type
tissue
43
primary cell
1
cell line
1
in vitro differentiated cells
Organ
18
epithelium
10
kidney
8
vasculature
7
connective tissue
6
blood vessel
5
brain
4
vein
3
heart
2
liver
1
eye
1
musculature of body
1
pancreas
Project
45
AMP
Genome assembly (visualization)
41
GRCh38
38
hg19
Lab
45
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
November, 2017
assay_title!
GRO-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
45 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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