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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
143
ChIP-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
162
Transcription
143
DNA binding
8
DNA accessibility
1
DNA methylation
Target of assay
85
transcription factor
57
histone modification
56
histone
35
narrow histone mark
23
RNA binding protein
21
broad histone mark
15
recombinant protein
8
chromatin remodeller
1
control
Date released
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
314
bam
311
bigWig
162
tsv
150
bed narrowPeak
126
fastq
109
bigBed narrowPeak
22
tagAlign
11
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
314
Homo sapiens
Biosample type
238
tissue
51
cell line
14
in vitro differentiated cells
11
primary cell
Organ
635
pancreas
566
connective tissue
424
adipose tissue
314
liver
290
epithelium
266
heart
205
kidney
187
vasculature
185
blood vessel
154
brain
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
314
AMP
Genome assembly (visualization)
359
hg19
314
GRCh38
Lab
314
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
314 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
147
75
2
1
right lobe of liver
2
7
1
1
2
cell line
HepG2
5
44
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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