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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
60
bam
51
fastq
45
bigWig
28
bed narrowPeak
15
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
62
Homo sapiens
Biosample type
29
in vitro differentiated cells
25
tissue
8
cell line
Organ
944
pancreas
681
connective tissue
518
epithelium
488
adipose tissue
473
liver
392
heart
353
kidney
230
vasculature
227
blood vessel
191
brain
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
45
GRCh38
43
hg19
1
hg18
Lab
62
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
November, 2017
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
2
1
1
1
cell line
H1-hESC
8
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