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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
163
DNA binding
162
Transcription
28
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
94
transcription factor
68
histone modification
67
histone
45
narrow histone mark
24
RNA binding protein
22
broad histone mark
13
recombinant protein
8
chromatin remodeller
1
control
Date released
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
August, 2017
20
May, 2022
18
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
351
bigWig
319
bam
190
bed narrowPeak
162
tsv
124
fastq
107
bigBed narrowPeak
30
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
359
Homo sapiens
Biosample type
268
tissue
64
cell line
14
in vitro differentiated cells
13
primary cell
Organ
658
pancreas
589
connective tissue
426
adipose tissue
359
liver
305
epithelium
188
heart
159
vasculature
156
blood vessel
149
brain
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
359
AMP
Genome assembly (visualization)
359
hg19
314
GRCh38
Lab
324
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
359 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
tissue
liver
83
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
cell line
HepG2
56
5
1
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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