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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
Assay category
19
DNA binding
Target of assay
841
histone modification
840
histone
433
narrow histone mark
406
broad histone mark
272
control
239
transcription factor
71
RNA binding protein
22
recombinant protein
19
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
November, 2017
6
January, 2019
5
November, 2018
3
August, 2017
3
December, 2017
2
December, 2018
Available data
19
bam
19
bed narrowPeak
19
bigWig
19
fastq
17
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
19
Homo sapiens
Biosample type
13
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
10
blood
10
bodily fluid
6
liver
2
connective tissue
1
epithelium
Project
19
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
19
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2017
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
cell line
GM12878
10
HepG2
3
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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