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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
19
histone
19
histone modification
15
transcription factor
10
narrow histone mark
9
broad histone mark
7
chromatin remodeller
1
RNA binding protein
Date released
November, 2017
15
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
34
bam
34
bed narrowPeak
34
bigWig
34
fastq
11
bigBed narrowPeak
10
bed bed3+
Organism
34
Homo sapiens
Biosample type
17
in vitro differentiated cells
6
tissue
5
cell line
4
primary cell
2
stem cell
Organ
9
pancreas
6
connective tissue
6
liver
5
epithelium
3
embryo
Project
34
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
35
inconsistent control read length
5
inconsistent control run_type
inconsistent assembly
month_released!
November, 2017
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
cell line
HepG2
5
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
stem cell
hESC
2
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