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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
309
ChIP-seq
Assay category
309
DNA binding
Target of assay
660
histone modification
659
histone
349
narrow histone mark
309
broad histone mark
258
transcription factor
240
control
65
RNA binding protein
23
recombinant protein
20
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
93
August, 2017
56
May, 2019
November, 2017
43
October, 2019
37
April, 2019
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
244
bigWig
243
bed narrowPeak
232
bam
176
bigBed narrowPeak
77
fastq
55
tagAlign
18
bed broadPeak
11
bed bed3+
Organism
305
Homo sapiens
Biosample type
241
tissue
primary cell
56
in vitro differentiated cells
11
cell line
1
stem cell
Organ
51
pancreas
40
connective tissue
37
heart
36
blood vessel
36
vasculature
34
limb
33
liver
28
brain
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
309
AMP
Genome assembly (visualization)
243
hg19
231
GRCh38
Lab
298
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
islet of Langerhans
14
+ See 20 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
EndoC_BH1
6
Panc1
4
HepG2
1
stem cell
hESC
1
See all biosamples
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