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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
29
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
52
DNA accessibility
51
DNA binding
Target of assay
44
histone
44
histone modification
23
narrow histone mark
21
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
604
bigWig
600
bam
399
fastq
289
bed narrowPeak
270
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
103
Homo sapiens
Biosample type
504
tissue
106
cell line
103
primary cell
17
in vitro differentiated cells
Organ
57
epithelium
22
pancreas
17
vasculature
16
kidney
15
blood vessel
15
connective tissue
13
vein
9
musculature of body
6
heart
5
brain
3
eye
2
liver
Project
103
AMP
Genome assembly (visualization)
99
GRCh38
96
hg19
Lab
103
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
November, 2017
assay_title!
RRBS
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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