Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
56
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
narrow histone mark
Date released
386
February, 2021
44
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
43
fastq
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
467
Homo sapiens
Biosample type
465
tissue
2
primary cell
1
in vitro differentiated cells
Organ
718
pancreas
594
connective tissue
468
adipose tissue
370
epithelium
276
liver
202
heart
171
kidney
151
bone element
100
vasculature
99
blood vessel
67
artery
53
brain
34
musculature of body
29
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
8
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
468
AMP
Genome assembly (visualization)
413
GRCh38
413
hg19
Lab
468
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
November, 2017
files.file_type!
bed narrowPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
468 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download