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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
73
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
73
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
52
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
1
recombinant protein
1
transcription factor
Date released
167
May, 2020
November, 2017
36
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
1
October, 2019
Available data
367
bam
354
bigWig
bed narrowPeak
174
tsv
150
fastq
109
bigBed narrowPeak
74
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
284
Homo sapiens
Biosample type
248
tissue
27
cell line
8
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
609
connective tissue
478
adipose tissue
371
epithelium
284
liver
202
heart
171
kidney
151
bone element
101
vasculature
100
blood vessel
67
artery
56
brain
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
284
AMP
Genome assembly (visualization)
169
hg19
164
GRCh38
Lab
247
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
month_released!
November, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
284 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
5
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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