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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
193
Homo sapiens
Biosample type
182
tissue
11
primary cell
Organ
940
pancreas
681
connective tissue
512
epithelium
489
adipose tissue
473
liver
350
kidney
345
heart
228
vasculature
226
blood vessel
193
brain
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
154
GRCh38
147
hg19
Lab
193
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2017
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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