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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ChIP-seq
Assay category
312
DNA binding
Target of assay
254
histone
254
histone modification
148
narrow histone mark
106
broad histone mark
54
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2428
bam
2244
bigWig
1441
bed narrowPeak
1041
tsv
989
fastq
730
bigBed narrowPeak
312
tagAlign
271
bed bed3+
252
bed broadPeak
221
bigBed broadPeak
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
305
Homo sapiens
Biosample type
172
tissue
100
primary cell
40
in vitro differentiated cells
Organ
74
liver
52
brain
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
228
AMP
84
T1D
Genome assembly (visualization)
215
hg19
187
GRCh38
Lab
228
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
month_released!
November, 2017
February, 2021
BIOSAMPLE
ASSAY
312 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
brain
14
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
+ See 40 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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