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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
196
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
86
transcription factor
65
histone modification
64
histone
45
control
43
narrow histone mark
23
RNA binding protein
21
broad histone mark
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
367
bam
354
bigWig
192
bed narrowPeak
174
tsv
150
fastq
109
bigBed narrowPeak
74
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
367
Homo sapiens
Biosample type
288
tissue
52
cell line
15
in vitro differentiated cells
12
primary cell
Organ
687
pancreas
593
connective tissue
442
adipose tissue
367
liver
306
epithelium
190
heart
139
kidney
137
brain
129
vasculature
127
blood vessel
107
limb
97
artery
66
bone element
60
blood
60
bodily fluid
50
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
367
AMP
Genome assembly (visualization)
319
hg19
314
GRCh38
Lab
367
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
May, 2019
BIOSAMPLE
ASSAY
367 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
cell line
HepG2
45
5
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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