Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
247
total RNA-seq
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
270
DNA binding
67
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
31
July, 2019
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
526
bigWig
516
bam
368
fastq
258
tsv
250
bed narrowPeak
100
tagAlign
81
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
784
Homo sapiens
Biosample type
2407
tissue
784
primary cell
352
in vitro differentiated cells
318
cell line
10
stem cell
Organ
287
epithelium
234
pancreas
37
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
musculature of body
13
heart
13
liver
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
399
AMP
204
T1D
180
HPAP
1
ITG
Genome assembly (visualization)
535
hg19
481
GRCh38
Lab
364
AMP-T2D consortium
239
Kyle Gaulton, UCSD
180
Klaus Kaestner, Upenn
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
May, 2022
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
784 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
12
1
exocrine cell
39
+ See 87 more…
See all biosamples
Download