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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
247
total RNA-seq
161
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
270
DNA binding
197
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
571
bam
399
fastq
270
tsv
260
bed narrowPeak
100
tagAlign
74
bigBed narrowPeak
19
zippedFastqFolder
15
bed broadPeak
15
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
914
Homo sapiens
Biosample type
2451
tissue
914
primary cell
393
in vitro differentiated cells
345
cell line
10
stem cell
Organ
302
epithelium
266
pancreas
33
connective tissue
25
vasculature
24
blood vessel
24
kidney
20
vein
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
7
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
597
hg19
503
GRCh38
Lab
484
AMP-T2D consortium
239
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
May, 2022
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
914 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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