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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
44
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
44
DNA binding
Target of assay
42
histone
42
histone modification
26
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
41
August, 2017
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2913
bam
2715
bigWig
1600
tsv
1391
bed narrowPeak
946
fastq
657
bigBed narrowPeak
320
tagAlign
264
bed bed3+
243
bed broadPeak
212
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
237
Homo sapiens
Biosample type
198
tissue
43
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
36
limb
33
brain
30
heart
19
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
243
AMP
Genome assembly (visualization)
219
hg19
218
GRCh38
Lab
241
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
month_released!
November, 2017
November, 2018
BIOSAMPLE
ASSAY
243 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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