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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
41
ChIP-seq
1
ATAC-seq
Assay category
207
DNA accessibility
41
DNA binding
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
41
August, 2017
9
November, 2018
9
October, 2019
October, 2017
1
March, 2019
1
November, 2020
Available data
2985
bam
2781
bigWig
1600
tsv
1452
bed narrowPeak
1017
fastq
724
bigBed narrowPeak
306
tagAlign
273
bed bed3+
248
bed broadPeak
221
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
242
Homo sapiens
Biosample type
203
tissue
43
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
36
limb
32
brain
30
heart
20
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
248
AMP
Genome assembly (visualization)
224
hg19
223
GRCh38
Lab
247
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent assembly
month_released!
November, 2017
October, 2017
BIOSAMPLE
ASSAY
248 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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