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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
89
total RNA-seq
12
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
179
DNA binding
89
Transcription
17
DNA accessibility
4
DNA methylation
Target of assay
129
histone modification
128
histone
66
broad histone mark
61
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
283
bigWig
268
fastq
264
bam
154
bed narrowPeak
89
tsv
48
bigBed narrowPeak
45
bed broadPeak
44
tagAlign
33
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
283
Homo sapiens
Biosample type
193
tissue
49
in vitro differentiated cells
47
primary cell
Organ
164
pancreas
65
connective tissue
20
liver
17
epithelium
16
adipose tissue
15
musculature of body
6
brain
1
spleen
Project
289
AMP
Genome assembly (visualization)
289
hg19
263
GRCh38
Lab
288
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
42
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 8 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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