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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
15
total RNA-seq
8
ATAC-seq
Assay category
33
DNA binding
15
Transcription
8
DNA accessibility
Target of assay
23
histone
23
histone modification
14
broad histone mark
10
control
9
narrow histone mark
Date released
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
56
fastq
54
bam
45
bigWig
28
bed narrowPeak
15
tsv
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
Organism
56
Homo sapiens
Biosample type
39
in vitro differentiated cells
17
tissue
Organ
13
embryo
10
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
56
AMP
Genome assembly (visualization)
45
GRCh38
44
hg19
Lab
55
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
November, 2017
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
brain
9
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
+ See 1 more…
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