Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1441
total RNA-seq
1405
ChIP-seq
481
ATAC-seq
278
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
31
Hi-C
28
WGBS
28
snATAC-seq
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA accessibility
Date released
10
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
27
Homo sapiens
Biosample type
28
tissue
Organ
11
pancreas
10
lung
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
HPAP
10
LungMap
10
T1D
8
AMP
Genome assembly (visualization)
1
hg19
Lab
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
month_released!
November, 2017
organ_slims!
blood
award.project!
HPAP
BIOSAMPLE
ASSAY
28 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
Download