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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
31
ChIP-seq
2
ATAC-seq
Assay category
175
DNA accessibility
31
DNA binding
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
154
June, 2019
November, 2017
28
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2943
bam
2767
bigWig
1591
tsv
1444
bed narrowPeak
1032
fastq
683
bigBed narrowPeak
305
tagAlign
239
bed bed3+
206
bed broadPeak
188
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
200
Homo sapiens
Biosample type
162
tissue
42
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
musculature of body
36
limb
35
brain
30
heart
21
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
206
AMP
Genome assembly (visualization)
194
GRCh38
182
hg19
Lab
204
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
month_released!
November, 2017
organ_slims!
musculature of body
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
206 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 37 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 17 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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