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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
151
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
253
Transcription
238
DNA binding
107
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
109
narrow histone mark
7
RNA binding protein
7
control
7
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
40
June, 2019
30
July, 2019
26
October, 2019
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
Available data
586
bigWig
564
bam
282
bed narrowPeak
251
tsv
217
fastq
99
tagAlign
96
bigBed narrowPeak
36
bed broadPeak
36
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
618
Homo sapiens
Biosample type
1748
tissue
618
primary cell
297
in vitro differentiated cells
264
cell line
3
stem cell
Organ
221
epithelium
185
pancreas
34
connective tissue
25
kidney
25
vasculature
22
blood vessel
17
vein
13
liver
12
brain
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
pericardium
Project
435
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
618
hg19
529
GRCh38
Lab
400
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
42
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
organ_slims!
pericardium
BIOSAMPLE
ASSAY
618 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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