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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
158
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
435
Transcription
288
DNA accessibility
158
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
30
July, 2019
25
October, 2019
8
January, 2021
7
August, 2020
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
499
bam
494
bigWig
363
fastq
269
tsv
188
bed narrowPeak
153
zippedFastqFolder
80
bigBed narrowPeak
53
tagAlign
38
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
966
Homo sapiens
Biosample type
2398
tissue
966
primary cell
339
in vitro differentiated cells
335
cell line
9
stem cell
Organ
367
epithelium
315
pancreas
35
connective tissue
31
kidney
25
vasculature
22
blood vessel
16
vein
12
brain
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
477
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
509
hg19
430
GRCh38
Lab
452
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
November, 2017
organ_slims!
pericardium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
966 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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