Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
929
histone modification
928
histone
476
narrow histone mark
451
broad histone mark
272
control
270
transcription factor
77
RNA binding protein
23
recombinant protein
21
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
21
bam
21
bed narrowPeak
21
bigWig
21
fastq
19
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
15
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
10
blood
10
bodily fluid
8
liver
2
connective tissue
1
epithelium
Project
21
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
Lab
21
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
organ_slims!
skeleton
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
21 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
GM12878
10
HepG2
5
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
Download