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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
709
ChIP-seq
215
ATAC-seq
174
single cell RNA-seq
139
DNase-seq
87
RNA microarray
28
snATAC-seq
24
WGBS
24
pCHi-C
16
small RNA-seq
11
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1208
Transcription
709
DNA binding
386
DNA accessibility
35
DNA methylation
11
3D chromatin structure
Target of assay
473
histone modification
472
histone
267
narrow histone mark
205
broad histone mark
147
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
223
August, 2021
193
May, 2020
173
October, 2019
128
June, 2019
120
July, 2018
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
60
February, 2023
58
May, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
November, 2018
23
October, 2017
20
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1663
bam
1575
bigWig
1056
tsv
755
bed narrowPeak
378
bigBed narrowPeak
377
fastq
172
tagAlign
168
bed broadPeak
166
bed bed3+
157
txt
137
bigBed broadPeak
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2458
Homo sapiens
Biosample type
2467
tissue
1048
primary cell
394
in vitro differentiated cells
281
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
183
brain
158
bone element
133
blood vessel
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2370
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1622
GRCh38
1604
hg19
Lab
2115
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2017
organ_slims!
vasculature
limb
BIOSAMPLE
ASSAY
2467 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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