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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
127
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
85
October, 2019
28
May, 2019
16
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
Available data
130
bam
121
bigWig
106
bed narrowPeak
52
tagAlign
31
bigBed narrowPeak
26
tsv
9
fastq
3
bed bed3+
3
bed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
158
Homo sapiens
Biosample type
151
tissue
7
primary cell
Organ
773
pancreas
650
connective tissue
483
adipose tissue
447
liver
395
epithelium
276
heart
191
kidney
172
vasculature
171
blood vessel
158
brain
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
125
hg19
120
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2017
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
20
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
superior frontal gyrus
4
+ See 68 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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