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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
24
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
86
October, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
2
March, 2020
1
February, 2023
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
160
Homo sapiens
Biosample type
156
tissue
4
primary cell
Organ
917
pancreas
657
connective tissue
497
epithelium
485
adipose tissue
463
liver
323
heart
276
kidney
217
vasculature
216
blood vessel
160
brain
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
Genome assembly (visualization)
124
hg19
122
GRCh38
Lab
160
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2017
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
+ See 70 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
choroid plexus epithelial cell
1
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