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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
112
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
102
histone
102
histone modification
84
narrow histone mark
18
broad histone mark
13
control
Date released
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
156
bam
149
bigWig
133
bed narrowPeak
58
bigBed narrowPeak
38
tagAlign
35
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
fastq
1
bed bed3
1
tagAlign bed3+
Organism
179
Homo sapiens
Biosample type
167
tissue
12
primary cell
Organ
941
pancreas
683
connective tissue
518
epithelium
490
adipose tissue
476
liver
354
kidney
353
heart
230
vasculature
227
blood vessel
179
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
147
GRCh38
143
hg19
Lab
179
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
November, 2017
October, 2017
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
5
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
2
1
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
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