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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
231
DNA binding
193
Transcription
24
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
95
transcription factor
85
histone modification
84
histone
51
control
51
narrow histone mark
33
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
367
bam
354
bigWig
192
bed narrowPeak
174
tsv
150
fastq
109
bigBed narrowPeak
74
tagAlign
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
463
Homo sapiens
Biosample type
355
tissue
85
cell line
15
in vitro differentiated cells
8
primary cell
Organ
917
pancreas
657
connective tissue
497
epithelium
485
adipose tissue
463
liver
323
heart
276
kidney
217
vasculature
216
blood vessel
160
brain
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
463
AMP
Genome assembly (visualization)
346
hg19
303
GRCh38
Lab
392
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
463 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
142
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
63
14
1
1
2
2
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
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