Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
18
DNA binding
16
DNA accessibility
12
Transcription
4
3D chromatin structure
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
19
April, 2020
17
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
114
bam
92
bed narrowPeak
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
51
tissue
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
122
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
56
artery
55
eye
39
brain
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
19
LungMap
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
32
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
November, 2017
files.file_type!
bigWig
BIOSAMPLE
ASSAY
51 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
Hi-C
total RNA-seq
pCHi-C
tissue
lung
10
9
1
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
+ See 7 more…
See all biosamples
Download