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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
114
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
control
Date released
79
October, 2019
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
153
bigWig
150
bam
139
bed narrowPeak
64
bigBed narrowPeak
43
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
23
tsv
10
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
179
Homo sapiens
Biosample type
170
tissue
9
primary cell
Organ
893
pancreas
649
connective tissue
490
epithelium
467
adipose tissue
424
liver
342
kidney
333
heart
210
vasculature
207
blood vessel
179
brain
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
151
GRCh38
146
hg19
Lab
179
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
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