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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
13
ChIP-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
24
Transcription
13
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
30
June, 2019
18
July, 2019
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
59
bam
50
bigWig
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
9
tagAlign
5
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
81
Homo sapiens
Biosample type
69
tissue
12
primary cell
Organ
795
pancreas
606
connective tissue
459
adipose tissue
427
epithelium
389
liver
324
kidney
291
heart
161
vasculature
159
bone element
158
blood vessel
121
artery
81
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
81
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
November, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
81 results
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DNase-seq
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
3
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
1
temporal lobe
1
2
1
Ammon's horn
1
1
1
+ See 26 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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