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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
35
DNA accessibility
24
Transcription
3
3D chromatin structure
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
November, 2018
1
February, 2023
Available data
241
bam
220
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
19
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
282
Homo sapiens
Biosample type
262
tissue
20
primary cell
Organ
890
pancreas
732
liver
676
connective tissue
484
adipose tissue
471
epithelium
350
kidney
343
heart
282
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
60
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
282
AMP
Genome assembly (visualization)
215
GRCh38
160
hg19
Lab
282
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
November, 2018
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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