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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
19
DNase-seq
8
Hi-C
1
FAIRE-seq
Assay category
201
Transcription
129
DNA binding
123
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
June, 2019
14
September, 2018
12
February, 2023
8
October, 2019
7
August, 2020
5
September, 2017
3
August, 2017
3
March, 2020
3
October, 2022
3
September, 2020
2
July, 2019
2
November, 2019
Available data
54
bed narrowPeak
54
bigWig
42
bam
40
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
1
tsv
Organism
131
Homo sapiens
Biosample type
98
primary cell
21
cell line
12
tissue
Organ
179
pancreas
164
kidney
131
epithelium
80
heart
63
vasculature
61
blood vessel
49
artery
48
limb
41
musculature of body
38
brain
34
connective tissue
32
eye
30
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
5
vein
3
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
79
AMP
52
HPAP
Genome assembly (visualization)
58
hg19
51
GRCh38
Lab
79
AMP-T2D consortium
52
Klaus Kaestner, Upenn
Audit category:
22
inconsistent ontology term
4
audit script error
month_released!
November, 2018
BIOSAMPLE
ASSAY
131 results
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ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
pancreatic acinar cell
9
1
endothelial cell of umbilical vein
2
2
1
pancreatic ductal cell
4
+ See 14 more…
cell line
EndoC_BH1
19
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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